Aug 5-9, 2024
08:00 am - 5:00 pm CDT
Instructors: David Molik, Siddhartha Kanrar, Tom Misilo
Helpers: Carolyn Jackson, Carol Sevin, Gwen Sibley, Kendra Spahr, Dave Turner
The Carpentries project comprises the Software Carpentry, Data Carpentry, and Library Carpentry communities of Instructors, Trainers, Maintainers, helpers, and supporters who share a mission to teach foundational computational and data science skills to researchers.
Want to learn more and stay engaged with The Carpentries? Carpentries Clippings is The Carpentries' biweekly newsletter, where we share community news, community job postings, and more. Sign up to receive future editions and read our full archive: https://carpentries.org/newsletter/
Where: Room 359, 1117 Mid-Campus Drive North, Manhattan, KS 66506. Get directions with OpenStreetMap or Google Maps.
When: Aug 5-9, 2024; 08:00 am - 5:00 pm CDT Add to your Google Calendar.
Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed (listed below).
Accessibility: We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:
We are dedicated to providing a positive and accessible learning environment for all. We do not require participants to provide documentation of disabilities or disclose any unnecessary personal information. However, we do want to help create an inclusive, accessible experience for all participants. We encourage you to share any information that would be helpful to make your Carpentries experience accessible. To request an accommodation for this workshop, please fill out the accommodation request form. If you have questions or need assistance with the accommodation form please email us.
Glosario is a multilingual glossary for computing and data science terms. The glossary helps learners attend workshops and use our lessons to make sense of computational and programming jargon written in English by offering it in their native language. Translating data science terms also provides a teaching tool for Carpentries Instructors to reduce barriers for their learners.
Contact: Please email kspahr@ksu.edu for more information.
Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.
Who can attend?: This workshop is open to researchers, staff, and graduate students affiliated with K-State or ARS.
Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.
We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.
| Before starting | Pre-workshop survey |
| 08:00 | Office Hours / Prep Time |
| 09:00 | Introduction to Genomics Workshop Week |
| 10:00 | Introduction to HPC, Beocat and Scinet (Including Globus File Transfer) |
| 11:00 | Life Sciences Workshop |
| 12:00 | Lunch Hour - Partipants on Their Own |
| 13:00 | Life Sciences Workshop |
| 14:00 | Life Sciences Workshop |
| 15:00 | Life Sciences Workshop |
| 16:00 | Life Sciences Workshop |
| 08:00 | Office Hours / Prep Time |
| 09:00 | Library Resources and Research Support Tools |
| 10:00 | Project organization and management |
| 11:00 | Introduction to the Command Line |
| 12:00 | Lunch Hour - Lunch and Learn with Brad Olson, Evolutionary Biologist, K-State Division of Biology, bring your own lunch |
| 13:00 | Introduction to the Command Line |
| 14:00 | Introduction to the Command Line |
| 15:00 | Introduction to the Command Line |
| 16:00 | Introduction to the Command Line |
| 08:00 | Office Hours / Prep Time |
| 09:00 | Data Wrangling and Processing |
| 10:00 | Data Wrangling and Processing |
| 11:00 | Data Wrangling and Processing |
| 12:00 | Lunch Hour - Partipants on Their Own |
| 13:00 | Data Wrangling and Processing |
| 14:00 | Data Wrangling and Processing |
| 15:00 | Data Wrangling and Processing |
| 16:00 | Data Wrangling and Processing |
| 08:00 | Office Hours / Prep Time |
| 09:00 | Intro to R and RStudio for Genomics |
| 10:00 | Intro to R and RStudio for Genomics |
| 11:00 | Intro to R and RStudio for Genomics |
| 12:00 | Lunch Hour - Lunch and Learn with Phillip Shults, Entomologist, USDA REE-ARS, bring your own lunch |
| 13:00 | Intro to R and RStudio for Genomics |
| 14:00 | Intro to R and RStudio for Genomics |
| 15:00 | Intro to R and RStudio for Genomics |
| 16:00 | Intro to R and RStudio for Genomics |
| 08:00 | Office Hours / Prep Time |
| 09:00 | Regular Expressions |
| 10:00 | Regular Expressions |
| 11:00 | Regular Expressions |
| 12:00 | Lunch Hour - Participants on Their Own |
| 13:00 | Version Control with Git |
| 14:00 | Version Control with Git |
| 15:00 | Version Control with Git |
| 16:00 | Version Control with Git |
| End | Post-workshop survey |
To participate in a workshop, K-State affiliates will need access to a BeoCat account. If you do not already have a BeoCat account, request one by July 30. You will need access to software as described below. In addition, you will need an up-to-date web browser.
We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.