Genomics Workshop

K-State Libraries

Aug 11-14, 2025

10:00 am - 4:00 PM (Central Time)

Instructors: David Molik, Siddhartha Kanrar, Teresa Shippy

Helpers: Will Tank, Raymond Deiser

General Information

The Carpentries project comprises the Software Carpentry, Data Carpentry, and Library Carpentry communities of Instructors, Trainers, Maintainers, helpers, and supporters who share a mission to teach foundational computational and data science skills to researchers.

Want to learn more and stay engaged with The Carpentries? Carpentries Clippings is The Carpentries' biweekly newsletter, where we share community news, community job postings, and more. Sign up to receive future editions and read our full archive: https://carpentries.org/newsletter/

Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Its target audience is researchers who have little to no prior computational experience, and its lessons are domain specific, building on learners' existing knowledge to enable them to quickly apply skills learned to their own research. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.

For more information on what we teach and why, please see our paper "Good Enough Practices for Scientific Computing".

Who: The course is only available the Kansas State University Community and is aimed at graduate students and other researchers. You don't need to have any previous knowledge of the tools that will be presented at the workshop.

Where: Hale Library, Room 359, 1117 Mid-Campus Drive North, Manhattan, KS 66506. Get directions with OpenStreetMap or Google Maps. What3Words location: ///regard.silk.basis.

When: Aug 11-14, 2025; 10:00 am - 4:00 PM (Central Time) Add to your Google Calendar.

Requirements: Attendees can use a classroom computer or bring a laptop with access to Excel. Other workshop software and data will be accessed through BeoCat. Attendees who do not already have an active BeoCat account should request one by August 4th

Accessibility: We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:

We are dedicated to providing a positive and accessible learning environment for all. We do not require participants to provide documentation of disabilities or disclose any unnecessary personal information. However, we do want to help create an inclusive, accessible experience for all participants. We encourage you to share any information that would be helpful to make your Carpentries experience accessible. To request an accommodation for this workshop, please fill out the accommodation request form. If you have questions or need assistance with the accommodation form please email us.

Glosario is a multilingual glossary for computing and data science terms. The glossary helps learners attend workshops and use our lessons to make sense of computational and programming jargon written in English by offering it in their native language. Translating data science terms also provides a teaching tool for Carpentries Instructors to reduce barriers for their learners.

Workshop Recordings: Carpentries workshops are designed to be interactive rather than lecture-based, with lessons that build upon one another. To foster a positive online learning environment, we strongly recommend that participants join in real time. As a result, workshop recordings are not recommended and may not be available to learners.

Contact: Please email cads@ksu.edu for more information.

Roles: To learn more about the roles at the workshop (who will be doing what), refer to our Workshop FAQ.


Code of Conduct

Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.


Collaborative Notes

We will use this collaborative document for chatting, taking notes, and sharing URLs and bits of code.


Surveys

Please be sure to complete these surveys before and after the workshop.

Pre-workshop Survey

Post-workshop Survey


Schedule

Day 1

Before starting Pre-workshop survey
Morning Project Organization and Management
Lunch Attendees are expected to find their own lunch, Lunch will be an hour.
AfternoonIntroduction to the Command Line

Day 2

MorningData Wrangling and Processing
Lunch Attendees are expected to find their own lunch, Lunch will be an hour.
AfternoonData Wrangling and Processing

Day 3

MorningContinuation: Data Wrangling and Processing
Lunch Attendees are expected to find their own lunch, Lunch will be an hour.
AfternoonRegular Expressions

Day 4

MorningVersion control with Git
After workshop Post-workshop survey
END

Setup

This workshop will taught on Beocat, and setup of files and software will be part of the lesson plan, please see Beocat on how to request a Beocat account.

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